{"id":12626,"date":"1970-03-04T15:23:11","date_gmt":"1970-03-04T06:23:11","guid":{"rendered":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/?p=12626"},"modified":"2020-03-19T14:49:54","modified_gmt":"2020-03-19T05:49:54","slug":"autoflex-speed_softwares-applications","status":"publish","type":"post","link":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/?p=12626","title":{"rendered":"autoflex speed_Mascot Database"},"content":{"rendered":"

\u3010biotools\u3011 -software- <\/p>\n

\"biotools_fig01\"<\/a><\/p>\n

Mascot\u306b\u3088\u308b\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u691c\u7d22\u3092\u652f\u63f4\u3057\u3001\u3055\u3089\u306b\u691c\u7d22\u306b\u3088\u3063\u3066\u30d2\u30c3\u30c8\u3057\u305f\u30bf\u30f3\u30d1\u30af\u8cea\u3042\u308b\u3044\u306f\u65e2\u77e5\u30bf\u30f3\u30d1\u30af\u8cea\u306e\u30a2\u30df\u30ce\u9178\u4e00\u6b21\u914d\u5217\u60c5\u5831\u3092\u30b9\u30da\u30af\u30c8\u30eb\u306b\u30de\u30c3\u30c1\u30f3\u30b0\u8868\u793a\u3059\u308b\u3002
\n\u307e\u305f\u30ea\u30f3\u9178\u5316\u306a\u3069\u306e\u7ffb\u8a33\u5f8c\u4fee\u98fe\u306e\u6709\u7121\u306b\u95a2\u3057\u3066\u3082\u5bb9\u6613\u306a\u30c7\u30fc\u30bf\u8868\u8a18\u304c\u53ef\u80fd\u3002
\n\u4e00\u65b9\u3001\u691c\u7d22\u3067\u6709\u610f\u306a\u30d2\u30c3\u30c8\u304c\u5f97\u3089\u308c\u306a\u304b\u3063\u305f\u672a\u77e5\u30da\u30d7\u30c1\u30c9\u306b\u95a2\u3057\u3066\u306f\u3001RapiDeNovo\u306b\u3088\u308bDeNovo\u30b7\u30fc\u30af\u30a8\u30f3\u30b7\u30f3\u30b0\u304c\u53ef\u80fd\u3002<\/p>\n


<\/p>\n

Mascot Server Databases info\u30002020.03.13<\/strong><\/p>\n

\u5f15\u7528: \u3069\u306e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u3092\u4f7f\u3046\u304b \uff5e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u691c\u7d22\u3068\u914d\u5217\u89e3\u6790\u30fb\u8aa4\u89e3\u3068\u96e3\u984c\uff5e<\/a><\/p>\n

\u5197\u9577\u6027(Redundancy)<\/strong><\/span>\u3068\u306f\u3001\u4e00\u822c\u7684\u306b\u3001\u5fc5\u8981\u6700\u4f4e\u9650\u306b\u52a0\u3048\u3066\u4f59\u5206\u3084\u91cd\u8907\u304c\u3042\u308b\u72b6\u614b\u307e\u305f\u306f\u305d\u306e\u4f59\u5270\u306e\u591a\u3055\u3092\u6307\u3059\u3002\u60c5\u5831\u79d1\u5b66\u306e\u5206\u91ce\u3067\u306f\u3001\u30c7\u30fc\u30bf\u306e\u8a18\u9332\u3084\u4f1d\u9001\u306b\u304a\u3044\u3066\u5fc5\u8981\u6700\u4f4e\u9650\u4ee5\u5916\u306b\u4f7f\u308f\u308c\u3066\u3044\u308b\u7121\u99c4(\u5197\u9577)\u306a\u30c7\u30fc\u30bf\u306e\u91cf\u3092\u793a\u3059\u3002
\n\u4f8b\u3048\u3070\u3001SwissProt\u3067PMF\u3092\u691c\u7d22\u3059\u308b\u3068\u304d\u306f\u5197\u9577\u6027\u304c\u4f4e\u3044\u306e\u30671\u3064\u306b\u6c7a\u307e\u308b\u304c\u3001\u540c\u3058\u30c7\u30fc\u30bf\u3092NCBI\u3067\u691c\u7d22\u3059\u308b\u3068\u3001PMF\u306e\u5834\u5408\u306f\u8cea\u91cf\u305d\u306e\u3082\u306e\u304c\u30da\u30d7\u30c1\u30c9\u306e\u8cea\u91cf\u3068\u306a\u308b\u306e\u3067\u3001\u8272\u3005\u306a\u5019\u88dc\u304c\u30de\u30c3\u30c1\u30f3\u30b0\u3057\u3066\u304f\u308b\u3088\u3046\u306b\u306a\u308a\u3001\u3069\u308c\u304c\u672c\u5f53\u306e\u30da\u30d7\u30c1\u30c9\u306b\u30de\u30c3\u30c1\u3057\u3066\u3044\u308b\u306e\u304b\u308f\u304b\u3089\u306a\u3044\u3002\u6700\u8fd1\u306e\u50be\u5411\u3068\u3057\u3066\u306f\u3001PMF\u3092\u4f7f\u3063\u3066\u30bf\u30f3\u30d1\u30af\u8cea\u3092\u540c\u5b9a\u3057\u305f\u3068\u3044\u3046\u8ad6\u6587\u3067\u306f\u3001MSMS\u306e\u30c7\u30fc\u30bf\u3092\u4f7f\u3063\u3066\u540c\u5b9a\u3092\u3059\u308b\u3053\u3068\u304c\u4e2d\u5fc3\u3068\u306a\u3063\u3066\u3044\u308b\u3002PMF\u306f\u4f01\u696d\u3067\u306e\u54c1\u8cea\u7ba1\u7406\u3084\u3001\u7814\u7a76\u3067\u306e\u30bf\u30f3\u30d1\u30af\u8cea\u306e\u5b9a\u6027(\u78ba\u304b\u306b\u3042\u308b\u304b\u78ba\u8a8d\u3059\u308b)\u306a\u3069\u306b\u4f7f\u7528\u3055\u308c\u3066\u3044\u308b\u3002<\/p>\n

<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
Environmental_EST<\/td>\n\u74b0\u5883<\/td>\n58.99Mb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Fungi_EST<\/td>\n\u83cc\u985e<\/td>\n2.3Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Human_EST<\/td>\n\u30d2\u30c8<\/td>\n5.2Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Invertebrates_EST<\/td>\n\u7121\u810a\u690e\u52d5\u7269<\/td>\n11.5Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Mammals_EST<\/td>\n\u54fa\u4e73\u985e<\/td>\n3.5Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Mus_EST<\/td>\n\u30de\u30a6\u30b9<\/td>\n2.8Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Plants_EST<\/td>\n\u690d\u7269<\/td>\n17.3Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Prokaryotes_EST<\/td>\n\u539f\u6838\u751f\u7269<\/td>\n1.28Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Rodents_EST<\/td>\n\u3052\u3063\u6b6f\u985e<\/td>\n872Mb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n
Vertebrates_EST<\/td>\n\u810a\u690e\u52d5\u7269<\/td>\n6.9Gb<\/td>\nNucleic acid(DNA)<\/td>\n<\/tr>\n<\/table>\n

EST\u306fExpress Sequence Tag\u306e\u7565\u3067\u3001mRNA\u65ad\u7247\u60c5\u5831\u306b\u57fa\u3065\u304d\u3001DB\u30b5\u30a4\u30ba\u5927\u304d\u304f\u3001\u5197\u9577\u6027\u304c\u9ad8\u3044<\/span><\/strong>( > 100,000,000entries )\u3002
\n<\/FONT><\/p>\n

<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
IPI_arabidopsis<\/td>\n\u30b7\u30ed\u30a4\u30ca\u30ba\u30ca<\/td>\n20.86Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
60.99Mb(dat)<\/td>\n<\/tr>\n
IPI_bovine<\/td>\n\u725b<\/td>\n19.75Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
50.36Mb(dat)<\/td>\n<\/tr>\n
IPI_chicken<\/td>\n\u9d8f<\/td>\n15.36Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
40.12Mb(dat)<\/td>\n<\/tr>\n
IPI_human<\/td>\n\u30d2\u30c8<\/td>\n48.71Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
138Mb(dat)<\/td>\n<\/tr>\n
IPI_mouse<\/td>\n\u30de\u30a6\u30b9<\/td>\n34.39Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
95.58Mb(dat)<\/td>\n<\/tr>\n
IPI_rat<\/td>\n\u30cd\u30ba\u30df<\/td>\n25.62Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
65.67Mb(dat)<\/td>\n<\/tr>\n
IPI_zebrafish<\/td>\n\u30bb\u30d6\u30e9\u30d5\u30a3\u30c3\u30b7\u30e5<\/td>\n25.00Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
67.50Mb(dat)<\/td>\n<\/tr>\n<\/table>\n

IPI\u306e\u66f4\u65b0\u306f\u7d42\u4e86\u3057\u3066\u304a\u308a\u3001UniProt\u306b\u5f15\u304d\u7d99\u304c\u308c\u3066\u3044\u308b\u3002IPI\u306fInternational Protein Index\u306e\u7565\u3067\u3001\u30d2\u30c8\u30b2\u30ce\u30e0\u6c7a\u5b9a\u306e\u6642\u671f\u306b\u3001EBI\u306eUniProt\u30fbEnsembl\u7814\u7a76\u8005\u3089\u304c\u4e2d\u5fc3\u306b\u306a\u3063\u3066\u4f5c\u6210\u3057\u305f\u3001\u65e2\u77e5\u30bf\u30f3\u30d1\u30af\u8cea\u914d\u5217\u306e\u5b8c\u5168\u30bb\u30c3\u30c8\u306b\u306a\u308b\u3002UniProt\u3001Ensembl\u3001RefSeq\u304b\u3089\u914d\u5217\u3092\u53ce\u96c6\u3057\u3001\u91cd\u8907\u306e\u306a\u3044\u3088\u3046\u306b\u6574\u7406\u306e\u4e0a\u3001\u4ee3\u8868\u7684\u306a\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u3078\u306e\u30ea\u30f3\u30af\u3092\u4ed8\u3057\u305f\u3002\u65e2\u77e5\u306e(\u65e2\u306b\u4ed6\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u306b\u8a18\u8f09\u3055\u308c\u3066\u3044\u308b)isoform\u306b\u3064\u3044\u3066\u306f\u500b\u5225\u306b\u914d\u5217\u3092\u53d6\u5f97\u3067\u304d\u308b\u3088\u3046\u306b\u3057\u305f\u3002\u30bf\u30f3\u30d1\u30af\u8cea\u3092\u4e3b\u773c\u3068\u3057\u305f(\u7279\u306b\u8cea\u91cf\u5206\u6790\u6cd5\u3067\u306e\u914d\u5217\u6c7a\u5b9a\u3092\u5ff5\u982d\u306b\u7f6e\u3044\u305f)\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u3067\u3042\u308b\u305f\u3081\u3001\u4eee\u306b\u7570\u306a\u3063\u305f\u907a\u4f1d\u5b50\u304b\u3089\u5b8c\u5168\u306b\u540c\u4e00\u914d\u5217\u306e\u30bf\u30f3\u30d1\u30af\u8cea\u304c\u7ffb\u8a33\u3055\u308c\u308b\u5834\u5408\u3067\u3082\u30011\u500b\u306e(\u305d\u306e\u30bf\u30f3\u30d1\u30af\u8cea\u306e)\u30a8\u30f3\u30c8\u30ea\u3057\u304b\u4f5c\u3089\u308c\u3066\u3044\u306a\u3044\u3002
\nIPI\u306f\u975e\u5197\u9577\u6027<\/span><\/strong>\u304b\u3064\u9ad8\u54c1\u8cea\u306aDB\u3067\u3001\u751f\u7269\u304c\u5408\u3048\u3070\u6700\u3082\u826f\u3044\u9078\u629e\u3002\u30c7\u30fc\u30bf\u6570\u306f\u7d048.7\u4e07\u4ef6\u3067\u3001\u7db2\u7f85\u6027\u304c\u9ad8\u3044\u3002( human\u306a\u3089\u301c90,000entries )
\n<\/FONT><\/p>\n

<\/p>\n\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
NCBI<\/td>\n–<\/td>\n9.2Gb<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
NCBIprot<\/td>\n\u30bf\u30f3\u30d1\u30af\u8cea<\/td>\n122.9Gb<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n<\/table>\n

NCBI(National Center for Biotechnology Information)<\/a>\u3067\u516c\u958b\u3055\u308c\u3066\u3044\u308b\u3001nr(non-redundant,\u975e\u5197\u9577\u6027)\u3067\u3042\u308b\u30bf\u30f3\u30d1\u30af\u8cea\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u3002\u30c7\u30fc\u30bf\u6570\u7d041,100\u4e07\u4ef6\u3002\u540d\u524d\u3068\u9055\u3044\u3001\u7db2\u7f85\u6027\u304c\u9ad8\u3044(\u5197\u9577\u6027\u3082\u9ad8\u3044)<\/span><\/strong>\u3002\u914d\u5217\u76f8\u540c\u6027\u691c\u7d22\u306a\u3069\u306b\u3082\u5229\u7528\u3055\u308c\u308b\u3002( >1,500,000entries )
\n\u25cb Wikipedia\u3000NCBI\u3068\u306f<\/a>
\n<\/FONT><\/p>\n

<\/p>\n\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
SwissProt<\/td>\n–<\/td>\n265Mb(fasta)<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n
3.0Gb(dat)<\/td>\n<\/tr>\n<\/table>\n

SwissProt\u306f1986\u5e74\u306b\u958b\u767a\u304c\u958b\u59cb\u3055\u308c\u305f\u3002\u914d\u5217\u306b\u8a73\u7d30\u306a\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3092\u4ed8\u4e0e\u3057\u3066\u304a\u308a\u3001\u73fe\u5728\u3067\u306f\u300cTrEMBL\u306e\u914d\u5217\u3092\u3001\u4eba\u9593\u306e\u30ad\u30e5\u30ec\u30fc\u30bf\u304c\u624b\u4f5c\u696d\u3067\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3057\u3001\u91cd\u8907\u304c\u306a\u304f\u306a\u308b\u3088\u3046\u306b\u305d\u306e\u7d50\u679c\u3092\u53ce\u9332\u300d\u3057\u3066\u3044\u308b\u3002\u307e\u305f\u3001isoform\u3054\u3068\u306b\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u304c\u4ed8\u3051\u3089\u308c\u3066\u3044\u308b\uff08\uff1d\u3069\u306e\u914d\u5217\u304c\u3069\u306e\u914d\u5217\u306eisoform\u304b\u3092\u541f\u5473\u3057\u3066\u3001\u60c5\u5831\u3092\u4e00\u3064\u306e\u30a8\u30f3\u30c8\u30ea\u306b\u307e\u3068\u3081\u3001\u305d\u306e\u65e8\u5206\u985e\u660e\u8a18\u3055\u308c\u3066\u3044\u308b\uff09\u3002\u7ffb\u8a33\u5f8c\u4fee\u98fe\u60c5\u5831\u3082\u5897\u52a0\u3057\u7d9a\u3051\u3066\u304a\u308a\u3001\u4e00\u822c\u7684\u306b\u306f\u5145\u5206\u306a\u91cf\u306e\u60c5\u5831\u304c\u53ce\u9332\u3055\u308c\u3066\u3044\u308b\u304c\u3001\u7ffb\u8a33\u5f8c\u4fee\u98fe\u5c02\u9580\u306e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u306b\u6bd4\u3079\u308c\u3070\u53ce\u9332\u4ef6\u6570\u306f\u5c11\u306a\u3044\u3002
\nSwissProt\u306f\u975e\u5197\u9577\u304b\u3064\u9ad8\u54c1\u8cea\u3067\u3001\u8ad6\u6587\u60c5\u5831\u306a\u3069\u306e\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3082\u8c4a\u5bcc\u3067\u3001PMF\u691c\u7d22\u306b\u6700\u9069\u3002( > 530,000entries )
\n\u25cb Wikipedia\u3000SwissProt\u3068\u306f<\/a>
\n<\/FONT><\/p>\n

<\/p>\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
Trembl<\/td>\n–<\/td>\n79.0Gb<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n<\/tr>\n<\/table>\n

\u65e7EMBL\uff08\u73feENA\uff09\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u306eCDS(Coding Sequence)\u60c5\u5831\u3092\u5869\u57fa\u914d\u5217\u304b\u3089\u30a2\u30df\u30ce\u9178\u914d\u5217\u306b\u5909\u63db\u3057\u305f\u3082\u306e\u3067\u3001NCBI\u306eGenPept\u306b\u76f8\u5f53\u3059\u308b\u3002\u30a2\u30df\u30ce\u9178\u914d\u5217\u81ea\u4f53\u306fGenPept\u3068\u540c\u4e00(\u306e\u7b48)\u3067\u91cd\u8907\u304c\u3042\u308b\u3002InterPro\u3092\u7528\u3044\u305f\u81ea\u52d5\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3001\u539f\u6838\u751f\u7269\u306b\u5bfe\u3059\u308bHAMAP\u81ea\u52d5\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u306a\u3069\u3001\u6bd4\u8f03\u7684\u8a73\u7d30\u306a\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u304c\u884c\u308f\u308c\u3066\u3044\u308b\u3002\u907a\u4f1d\u5b50\u5bfe\u8c61\u306e\u81ea\u52d5\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u3067\u3042\u308b\u305f\u3081\u3001isoform\u3054\u3068\u306e\u30a2\u30ce\u30c6\u30fc\u30b7\u30e7\u30f3\u306f\u306a\u3044(\uff1disoform\u914d\u5217\u3082\u3001\u72ec\u7acb\u3057\u305f\u914d\u5217\u3068\u3057\u3066\u7121\u95a2\u4fc2\u306b\u30a8\u30f3\u30c8\u30ea\u304c\u4f5c\u3089\u308c\u3066\u3044\u308b)\u3002
\n\u25cb HP\u3000Tremble\u3068\u306f<\/a>
\n<\/FONT><\/p>\n

<\/p>\n\n\n\n
DB Name<\/th>\nCategory<\/th>\nFile Size<\/th>\nTarget<\/th>\n<\/tr>\n
UniRef100<\/td>\n–<\/td>\n99.0Gb<\/td>\nAmino acid(protein)<\/td>\n<\/tr>\n<\/tr>\n<\/table>\n

UniProtKB<\/a>\u53ce\u9332\u914d\u5217\u306b\u5bfe\u3057\u3066\u3001\u914d\u5217\u985e\u4f3c\u6027\u306b\u57fa\u3065\u3044\u3066\u30af\u30e9\u30b9\u30bf\u30ea\u30f3\u30b0\u3057\u3001\u305d\u306e\u30af\u30e9\u30b9\u30bf\u30fc\u3092\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u5316\u3057\u3066\u3044\u308b\u3002
\n\u25cb HP\u3000UniRef\u3068\u306f<\/a>
\n<\/FONT><\/p>\n

\u2605 \u6ce8\u610f\u3000NCBIprot\u3001Tremble\u3001UniRef100\u7b49\u306f\u30d5\u30a1\u30a4\u30eb\u30b5\u30a4\u30ba\u304c\u5927\u304d\u3044\u305f\u3081\u3001\u753b\u50cf\u306e\u3088\u3046\u306b”Taxonomy”\u306b\u304a\u3044\u3066\u3001\u7a2e\u3084\u5c5e\u3092\u7d5e\u3063\u3066\u304b\u3089\u691c\u7d22\u3059\u308b\u3088\u3046\u306b\u3057\u305f\u307b\u3046\u304c\u7121\u96e3\u3067\u3059\u3002\u300cAll entries\u300d\u3068\u3057\u3066\u3057\u307e\u3046\u3068\u3001\u540c\u5b9a\u306b\u304b\u306a\u308a\u306e\u6642\u9593\u304c\u304b\u304b\u308a\u307e\u3059\u3002<\/FONT><\/p>\n

\"\"<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

\u3010biotools\u3011 -software- Mascot\u306b\u3088\u308b\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u691c\u7d22\u3092\u652f\u63f4\u3057\u3001\u3055\u3089\u306b\u691c\u7d22\u306b\u3088\u3063\u3066\u30d2\u30c3\u30c8\u3057\u305f\u30bf\u30f3\u30d1\u30af\u8cea\u3042\u308b\u3044\u306f\u65e2\u77e5\u30bf\u30f3\u30d1\u30af\u8cea\u306e\u30a2\u30df\u30ce\u9178\u4e00\u6b21\u914d\u5217\u60c5\u5831\u3092\u30b9\u30da\u30af\u30c8\u30eb\u306b\u30de\u30c3\u30c1\u30f3\u30b0\u8868\u793a\u3059\u308b\u3002 \u307e\u305f\u30ea\u30f3\u9178\u5316\u306a\u3069\u306e\u7ffb\u8a33\u5f8c\u4fee\u98fe\u306e\u6709\u7121\u306b\u95a2\u3057\u3066\u3082\u5bb9\u6613\u306a\u30c7\u30fc\u30bf\u8868\u8a18\u304c\u53ef\u80fd\u3002 \u4e00\u65b9\u3001\u691c\u7d22\u3067\u6709\u610f\u306a\u30d2\u30c3\u30c8\u304c\u5f97\u3089\u308c\u306a\u304b\u3063\u305f\u672a\u77e5\u30da\u30d7\u30c1\u30c9\u306b\u95a2\u3057\u3066\u306f\u3001RapiDeNovo\u306b\u3088\u308bDeNovo\u30b7\u30fc\u30af\u30a8\u30f3\u30b7\u30f3\u30b0\u304c\u53ef\u80fd\u3002 Mascot Server Databases info\u30002020.03.13 \u5f15\u7528: \u3069\u306e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u3092\u4f7f\u3046\u304b \uff5e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u691c\u7d22\u3068\u914d\u5217\u89e3\u6790\u30fb\u8aa4\u89e3\u3068\u96e3\u984c\uff5e \u5197\u9577\u6027(Redundancy)\u3068\u306f\u3001\u4e00\u822c\u7684\u306b\u3001\u5fc5\u8981\u6700\u4f4e\u9650\u306b\u52a0\u3048\u3066\u4f59\u5206\u3084\u91cd\u8907\u304c\u3042\u308b\u72b6\u614b\u307e\u305f\u306f\u305d\u306e\u4f59\u5270\u306e\u591a\u3055\u3092\u6307\u3059\u3002\u60c5\u5831\u79d1\u5b66\u306e\u5206\u91ce\u3067\u306f\u3001\u30c7\u30fc\u30bf\u306e\u8a18\u9332\u3084\u4f1d\u9001\u306b\u304a\u3044\u3066\u5fc5\u8981\u6700\u4f4e\u9650\u4ee5\u5916\u306b\u4f7f\u308f\u308c\u3066\u3044\u308b\u7121\u99c4(\u5197\u9577)\u306a\u30c7\u30fc\u30bf\u306e\u91cf\u3092\u793a\u3059\u3002 \u4f8b\u3048\u3070\u3001SwissProt\u3067PMF\u3092\u691c\u7d22\u3059\u308b\u3068\u304d\u306f\u5197\u9577\u6027\u304c\u4f4e\u3044\u306e\u30671\u3064\u306b\u6c7a\u307e\u308b\u304c\u3001\u540c\u3058\u30c7\u30fc\u30bf\u3092NCBI\u3067\u691c\u7d22\u3059\u308b\u3068\u3001PMF\u306e\u5834\u5408\u306f\u8cea\u91cf\u305d\u306e\u3082\u306e\u304c\u30da\u30d7\u30c1\u30c9\u306e\u8cea\u91cf\u3068\u306a\u308b\u306e\u3067\u3001\u8272\u3005\u306a\u5019\u88dc\u304c\u30de\u30c3\u30c1\u30f3\u30b0\u3057\u3066\u304f\u308b\u3088\u3046\u306b\u306a\u308a\u3001\u3069\u308c\u304c\u672c\u5f53\u306e\u30da\u30d7\u30c1\u30c9\u306b\u30de\u30c3\u30c1\u3057\u3066\u3044\u308b\u306e\u304b\u308f\u304b\u3089\u306a\u3044\u3002\u6700\u8fd1\u306e\u50be\u5411\u3068\u3057\u3066\u306f\u3001PMF\u3092\u4f7f\u3063\u3066\u30bf\u30f3\u30d1\u30af\u8cea\u3092\u540c\u5b9a\u3057\u305f\u3068\u3044\u3046\u8ad6\u6587\u3067\u306f\u3001MSMS\u306e\u30c7\u30fc\u30bf\u3092\u4f7f\u3063\u3066\u540c\u5b9a\u3092\u3059\u308b\u3053\u3068\u304c\u4e2d\u5fc3\u3068\u306a\u3063\u3066\u3044\u308b\u3002PMF\u306f\u4f01\u696d\u3067\u306e\u54c1\u8cea\u7ba1\u7406\u3084\u3001\u7814\u7a76\u3067\u306e\u30bf\u30f3\u30d1\u30af\u8cea\u306e\u5b9a\u6027(\u78ba\u304b\u306b\u3042\u308b\u304b\u78ba\u8a8d\u3059\u308b)\u306a\u3069\u306b\u4f7f\u7528\u3055\u308c\u3066\u3044\u308b\u3002 DB Name Category File Size Target Environmental_EST \u74b0\u5883 58.99Mb Nucleic acid(DNA) Fungi_EST \u83cc\u985e 2.3Gb Nucleic acid(DNA) Human_EST \u30d2\u30c8 5.2Gb Nucleic acid(DNA) Invertebrates_EST \u7121\u810a\u690e\u52d5\u7269 11.5Gb Nucleic acid(DNA) Mammals_EST \u54fa\u4e73\u985e 3.5Gb Nucleic acid(DNA) Mus_EST \u30de\u30a6\u30b9 2.8Gb Nucleic acid(DNA) Plants_EST \u690d\u7269 17.3Gb Nucleic acid(DNA) [Continue]<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[15,23],"tags":[],"class_list":["post-12626","post","type-post","status-publish","format-standard","hentry","category-15","category-23"],"_links":{"self":[{"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/posts\/12626","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=12626"}],"version-history":[{"count":68,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/posts\/12626\/revisions"}],"predecessor-version":[{"id":12714,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=\/wp\/v2\/posts\/12626\/revisions\/12714"}],"wp:attachment":[{"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=12626"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=12626"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/gene4.knit.kagoshima-u.ac.jp\/grc\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=12626"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}